[16] | 1 | #!/usr/bin/perl |
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| 2 | |
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| 3 | # quick, very dirty little script so that we can put all the |
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| 4 | # information for building a residue book set (except the original |
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| 5 | # partitioning) in one spec file. |
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| 6 | |
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| 7 | #eg: |
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| 8 | |
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| 9 | # >res0_128_128 interleaved |
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| 10 | # haux 44c0_s/resaux_0.vqd res0_96_128aux 0,4,2 9 |
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| 11 | # :1 res0_128_128_1.vqd, 4, nonseq cull, 0 +- 1 |
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| 12 | # :2 res0_128_128_2.vqd, 4, nonseq, 0 +- 1(.7) 2 |
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| 13 | # :3 res0_128_128_3.vqd, 4, nonseq, 0 +- 1(.7) 3 5 |
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| 14 | # :4 res0_128_128_4.vqd, 2, nonseq, 0 +- 1(.7) 3 5 8 11 |
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| 15 | # :5 res0_128_128_5.vqd, 1, nonseq, 0 +- 1 3 5 8 11 14 17 20 24 28 31 35 39 |
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| 16 | |
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| 17 | |
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| 18 | die "Could not open $ARGV[0]: $!" unless open (F,$ARGV[0]); |
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| 19 | |
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| 20 | $goflag=0; |
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| 21 | while($line=<F>){ |
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| 22 | |
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| 23 | print "#### $line"; |
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| 24 | if($line=~m/^GO/){ |
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| 25 | $goflag=1; |
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| 26 | next; |
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| 27 | } |
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| 28 | |
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| 29 | if($goflag==0){ |
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| 30 | if($line=~m/\S+/ && !($line=~m/^\#/) ){ |
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| 31 | my $command=$line; |
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| 32 | print ">>> $command"; |
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| 33 | die "Couldn't shell command.\n\tcommand:$command\n" |
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| 34 | if syst($command); |
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| 35 | } |
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| 36 | next; |
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| 37 | } |
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| 38 | |
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| 39 | # >res0_128_128 |
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| 40 | if($line=~m/^>(\S+)\s+(\S*)/){ |
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| 41 | # set the output name |
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| 42 | $globalname=$1; |
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| 43 | $interleave=$2; |
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| 44 | next; |
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| 45 | } |
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| 46 | |
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| 47 | # haux 44c0_s/resaux_0.vqd res0_96_128aux 0,4,2 9 |
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| 48 | if($line=~m/^h(.*)/){ |
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| 49 | # build a huffman book (no mapping) |
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| 50 | my($name,$datafile,$bookname,$interval,$range)=split(' ',$1); |
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| 51 | |
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| 52 | # check the desired subdir to see if the data file exists |
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| 53 | if(-e $datafile){ |
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| 54 | my $command="cp $datafile $bookname.tmp"; |
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| 55 | print ">>> $command\n"; |
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| 56 | die "Couldn't access partition data file.\n\tcommand:$command\n" |
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| 57 | if syst($command); |
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| 58 | |
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| 59 | my $command="huffbuild $bookname.tmp $interval"; |
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| 60 | print ">>> $command\n"; |
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| 61 | die "Couldn't build huffbook.\n\tcommand:$command\n" |
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| 62 | if syst($command); |
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| 63 | |
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| 64 | my $command="rm $bookname.tmp"; |
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| 65 | print ">>> $command\n"; |
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| 66 | die "Couldn't remove temporary file.\n\tcommand:$command\n" |
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| 67 | if syst($command); |
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| 68 | }else{ |
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| 69 | my $command="huffbuild $bookname.tmp 0-$range"; |
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| 70 | print ">>> $command\n"; |
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| 71 | die "Couldn't build huffbook.\n\tcommand:$command\n" |
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| 72 | if syst($command); |
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| 73 | |
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| 74 | } |
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| 75 | next; |
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| 76 | } |
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| 77 | |
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| 78 | # :1 res0_128_128_1.vqd, 4, nonseq, 0 +- 1 |
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| 79 | if($line=~m/^:(.*)/){ |
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| 80 | my($namedata,$dim,$seqp,$vals)=split(',',$1); |
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| 81 | my($name,$datafile)=split(' ',$namedata); |
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| 82 | # build value list |
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| 83 | my$plusminus="+"; |
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| 84 | my$list; |
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| 85 | my$thlist; |
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| 86 | my$count=0; |
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| 87 | foreach my$val (split(' ',$vals)){ |
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| 88 | if($val=~/\-?\+?\d+/){ |
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| 89 | my$th; |
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| 90 | |
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| 91 | # got an explicit threshhint? |
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| 92 | if($val=~/([0-9\.]+)\(([^\)]+)/){ |
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| 93 | $val=$1; |
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| 94 | $th=$2; |
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| 95 | } |
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| 96 | |
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| 97 | if($plusminus=~/-/){ |
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| 98 | $list.="-$val "; |
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| 99 | if(defined($th)){ |
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| 100 | $thlist.="," if(defined($thlist)); |
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| 101 | $thlist.="-$th"; |
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| 102 | } |
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| 103 | $count++; |
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| 104 | } |
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| 105 | if($plusminus=~/\+/){ |
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| 106 | $list.="$val "; |
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| 107 | if(defined($th)){ |
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| 108 | $thlist.="," if(defined($thlist)); |
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| 109 | $thlist.="$th"; |
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| 110 | } |
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| 111 | $count++; |
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| 112 | } |
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| 113 | }else{ |
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| 114 | $plusminus=$val; |
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| 115 | } |
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| 116 | } |
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| 117 | die "Couldn't open temp file temp$$.vql: $!" unless |
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| 118 | open(G,">temp$$.vql"); |
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| 119 | print G "$count $dim 0 "; |
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| 120 | if($seqp=~/non/){ |
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| 121 | print G "0\n$list\n"; |
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| 122 | }else{ |
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| 123 | print G "1\n$list\n"; |
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| 124 | } |
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| 125 | close(G); |
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| 126 | |
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| 127 | my $command="latticebuild temp$$.vql > $globalname$name.vqh"; |
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| 128 | print ">>> $command\n"; |
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| 129 | die "Couldn't build latticebook.\n\tcommand:$command\n" |
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| 130 | if syst($command); |
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| 131 | |
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| 132 | my $command="latticehint $globalname$name.vqh $thlist > temp$$.vqh"; |
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| 133 | print ">>> $command\n"; |
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| 134 | die "Couldn't pre-hint latticebook.\n\tcommand:$command\n" |
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| 135 | if syst($command); |
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| 136 | |
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| 137 | if(-e $datafile){ |
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| 138 | |
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| 139 | if($interleave=~/non/){ |
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| 140 | $restune="res1tune"; |
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| 141 | }else{ |
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| 142 | $restune="res0tune"; |
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| 143 | } |
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| 144 | |
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| 145 | if($seqp=~/cull/){ |
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| 146 | my $command="$restune temp$$.vqh $datafile 1 > $globalname$name.vqh"; |
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| 147 | print ">>> $command\n"; |
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| 148 | die "Couldn't tune latticebook.\n\tcommand:$command\n" |
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| 149 | if syst($command); |
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| 150 | }else{ |
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| 151 | my $command="$restune temp$$.vqh $datafile > $globalname$name.vqh"; |
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| 152 | print ">>> $command\n"; |
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| 153 | die "Couldn't tune latticebook.\n\tcommand:$command\n" |
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| 154 | if syst($command); |
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| 155 | } |
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| 156 | |
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| 157 | my $command="latticehint $globalname$name.vqh $thlist > temp$$.vqh"; |
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| 158 | print ">>> $command\n"; |
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| 159 | die "Couldn't post-hint latticebook.\n\tcommand:$command\n" |
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| 160 | if syst($command); |
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| 161 | |
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| 162 | }else{ |
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| 163 | print "No matching training file; leaving this codebook untrained.\n"; |
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| 164 | } |
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| 165 | |
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| 166 | my $command="mv temp$$.vqh $globalname$name.vqh"; |
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| 167 | print ">>> $command\n"; |
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| 168 | die "Couldn't rename latticebook.\n\tcommand:$command\n" |
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| 169 | if syst($command); |
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| 170 | |
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| 171 | my $command="rm temp$$.vql"; |
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| 172 | print ">>> $command\n"; |
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| 173 | die "Couldn't remove temp files.\n\tcommand:$command\n" |
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| 174 | if syst($command); |
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| 175 | |
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| 176 | next; |
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| 177 | } |
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| 178 | } |
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| 179 | |
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| 180 | $command="rm -f temp$$.vqd"; |
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| 181 | print ">>> $command\n"; |
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| 182 | die "Couldn't remove temp files.\n\tcommand:$command\n" |
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| 183 | if syst($command); |
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| 184 | |
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| 185 | sub syst{ |
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| 186 | system(@_)/256; |
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| 187 | } |
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